Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYRPQDIFFRSSAPVTIDEDRCIADKGC--TVCVEVCPMDLLAIDPTTRKAYMAY-DECWYCMPCEKDCPTGAVKVEIPYLLR
1JNZ Chain:D ((2-64))
--------------PSFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDV-------
General information:
TITO was launched using:
RESULT:
Template:
1JNZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44753 for 413 contacts (-108.4/contact) +
2D Compatibility (PS) -6067 + (NN) -3737 + (LL) 1816
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: -57941.0 ( -140.29 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1JNZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JNZ-query.scw
PDB file :
Tito_Scwrl_1JNZ.pdb
: