Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
4E5U Chain:B ((5-212))
-TGLFVTLEGPEGA--STNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLN-
General information:
TITO was launched using:
RESULT:
Template:
4E5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86349 for 1607 contacts (-53.7/contact) +
2D Compatibility (PS) -23823 + (NN) -21025 + (LL) -72
1D Compatibility (HY) -26000 + (ID) 10300
Total energy: -167569.0 ( -104.27 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_4E5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E5U-query.scw
PDB file :
Tito_Scwrl_4E5U.pdb
: