Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRRQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
3GN9 Chain:C ((5-110))
----------------------------------NKEKADQQKAITDIVALENALDMYKLDNSVYPTTDQGLEALVTKPS-SPEPRNYRNGGYIKRLPKDPWGNEYQYMSPGDKGTIDIFTLGADGQEGGEGAAADIGNWN-
General information:
TITO was launched using:
RESULT:
Template:
3GN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3147 for 746 contacts (4.2/contact) +
2D Compatibility (PS) -11838 + (NN) -13245 + (LL) 3952
1D Compatibility (HY) -8000 + (ID) 3050
Total energy: -29034.0 ( -38.92 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3GN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GN9-query.scw
PDB file :
Tito_Scwrl_3GN9.pdb
: