Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
1W8H Chain:D ((2-115))
-ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
General information:
TITO was launched using:
RESULT:
Template:
1W8H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43765 for 837 contacts (-52.3/contact) +
2D Compatibility (PS) -13050 + (NN) -12093 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 5700
Total energy: -88400.0 ( -105.62 by residue)
QMean score : 0.728
(partial model without unconserved sides chains):
PDB file :
Tito_1W8H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W8H-query.scw
PDB file :
Tito_Scwrl_1W8H.pdb
: