Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQNSLLDGRRVLLTGGARGLGYAFAEAAARAGARVVIADILEERVQRSARELAEQ-GLDISGLPLDLADPVSIERCVAAAVERLGGLDGLVNNASITNSGGKSCEELEIEVFDRVLQVNVRGTWLMTRACLPALRESGRGAVVNLASDTPLWGAPNLLAYSASKGALIAMTRSLARELGGDGITVNAIAPGLVEVEATEYVPAARHRLYREQRALQRGQQPADVCGAVLFALSDLSRFITGQTLPVNGGFVMP
2PNF Chain:B ((5-247))
------LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRD--KLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGGM---
General information:
TITO was launched using:
RESULT:
Template:
2PNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148465 for 2075 contacts (-71.5/contact) +
2D Compatibility (PS) -26359 + (NN) -9752 + (LL) 284
1D Compatibility (HY) -20000 + (ID) 4400
Total energy: -208692.0 ( -100.57 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_2PNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PNF-query.scw
PDB file :
Tito_Scwrl_2PNF.pdb
: