Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3GHZ Chain:C ((4-158))
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLM--
General information:
TITO was launched using:
RESULT:
Template:
3GHZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120805 for 1321 contacts (-91.4/contact) +
2D Compatibility (PS) -17024 + (NN) -10901 + (LL) 244
1D Compatibility (HY) -17200 + (ID) 5600
Total energy: -171286.0 ( -129.66 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3GHZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHZ-query.scw
PDB file :
Tito_Scwrl_3GHZ.pdb
: