Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
2PBC Chain:C ((8-100))
-------------------KGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRT-
General information:
TITO was launched using:
RESULT:
Template:
2PBC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48745 for 636 contacts (-76.6/contact) +
2D Compatibility (PS) -9602 + (NN) 2992 + (LL) 1264
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -65691.0 ( -103.29 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_2PBC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBC-query.scw
PDB file :
Tito_Scwrl_2PBC.pdb
: