Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
3GVF Chain:A ((23-196))
-SFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVANFKK
General information:
TITO was launched using:
RESULT:
Template:
3GVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95449 for 1385 contacts (-68.9/contact) +
2D Compatibility (PS) -18955 + (NN) -10736 + (LL) 208
1D Compatibility (HY) -20000 + (ID) 5450
Total energy: -150382.0 ( -108.58 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_3GVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVF-query.scw
PDB file :
Tito_Scwrl_3GVF.pdb
: