Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGQRYRETPLDIERLRRLNRATVERYMAMKGA-ERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAEWLERCFPDWEWHNVRIFETEDPNHFWVECDGRGKALVPGYPQGY---CENHYIHSFELENGRIKRNREFMNPIQKLRALGIAVPQIKRDGIPT
3JUM Chain:A ((35-184))
-----------AQVAARQHNRKIVEQYMHTRGEARLKR-HLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDPNWFWVECRGEGAIVFPGY---PRGQYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGIEVPEVRRDGLP-
General information:
TITO was launched using:
RESULT:
Template:
3JUM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38340 for 963 contacts (-39.8/contact) +
2D Compatibility (PS) -15901 + (NN) -6257 + (LL) 520
1D Compatibility (HY) -12000 + (ID) 3800
Total energy: -75778.0 ( -78.69 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_3JUM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JUM-query.scw
PDB file :
Tito_Scwrl_3JUM.pdb
: