Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLEQILTPGRSL-VNVPGGSKKRVLEQIANLVARELPEFDAQTIFENLVAR-EKLGSTG-FGNGIAIPHCRLS-GCQSPISAVLHLDAPVDFDALDGAPVDLLFVLLVPEAATEEHL-ELLRQIAAMLDRADVRDRLRSAPTAEALYQIVVDVQNGQ
3BJV Chain:A ((1-149))
-MNLAQAFKENHSIRLGLTAKDWKEAVKLSVTPLIES--GAVKPEYYNAIIESTESYGPYYILMPGMAMPHARPEAGVQRDAFSLVTLTEPVTFTDG--KEVQVLLALAATSS--KIHTSVAIPQIIALFELDHSIERLVNCKTPEEVLAMVEESK---
General information:
TITO was launched using:
RESULT:
Template:
3BJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108994 for 1119 contacts (-97.4/contact) +
2D Compatibility (PS) -16339 + (NN) -11276 + (LL) 60
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -145599.0 ( -130.12 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_3BJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJV-query.scw
PDB file :
Tito_Scwrl_3BJV.pdb
: