Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLQQLFENNVRWAEAIKQEDPDFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASLHNDQLGLIDGWLRSIRDLAYEYREHLEQLPTEEERVDRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDGLWKNLNVTVSGLDQLPPQYRLSPLGGCC
2A8D Chain:C ((1-206))
MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHGHLLGKL-SPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDGFLVDQGVMATSRETLEISYR--------
General information:
TITO was launched using:
RESULT:
Template:
2A8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151732 for 1517 contacts (-100.0/contact) +
2D Compatibility (PS) -22016 + (NN) -8412 + (LL) -188
1D Compatibility (HY) -23200 + (ID) 5150
Total energy: -210698.0 ( -138.89 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_2A8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A8D-query.scw
PDB file :
Tito_Scwrl_2A8D.pdb
: