Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
3HSD Chain:A ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDALNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
3HSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114278 for 1138 contacts (-100.4/contact) +
2D Compatibility (PS) -15980 + (NN) -5604 + (LL) 832
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -154980.0 ( -136.19 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_3HSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HSD-query.scw
PDB file :
Tito_Scwrl_3HSD.pdb
: