Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
2VQS Chain:D ((12-208))
-----------TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERI---------CVPLKYLQELHELHEDWLIHQ-----CKVLVLDAD------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VQS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102802 for 1379 contacts (-74.5/contact) +
2D Compatibility (PS) -19942 + (NN) -8842 + (LL) 4180
1D Compatibility (HY) -29600 + (ID) 9150
Total energy: -166156.0 ( -120.49 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2VQS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQS-query.scw
PDB file :
Tito_Scwrl_2VQS.pdb
: