Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MADKVQTTLLFLAVGEFSVGILGNAFIGLVNCMDWVKKRKIASIDL---ILTSLAISRICLLCVILLDCFIL----VLYPDVYATGKEMR----------IIDFFWTLTNHLSIWFAT----------CLSIYYFFKIGNFFHPLFLWMKWRIDRVIS-------------------------WILLGCVVLSVFIS--LPATENLNADFRFCVKAKRKTNLTWSCRVNKTQHASTKLFLNLATLLPF---------CVCLMSFFLLILSLRRHIRRMQLSATGC----RDPSTEAHV---RALKAVISFLLLFIAYYLSFLIATSSYFMPETELAVIFGES--IALIYPSSHSFILI------LGNNKLRHASLKVIWKVMSILKGRKFQQHKQI-------- |
| 3UO9 Chain:A ((67-489)) | PSLEDLLFYTIAEGQEKIPVHKFITALKSTGLRTSDPRLKECMDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMY------DFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UO9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -341737 for 2450 contacts (-139.5/contact) +
2D Compatibility (PS) -31959 + (NN) -7305 + (LL) 752
1D Compatibility (HY) -14400 + (ID) 1950
Total energy: -396599.0 ( -161.88 by residue)
QMean score : 0.271
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