Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGQVLSNDDWNRYKKEGFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYD-L-------DRYGIMFRAS-------------PRQADVMIVAGTLTNKMA---------AALRKVYDQMADPKYVVSMGSCANGGGYYHYS--YSVVRGCDRIVP----VDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI
1H2A Chain:S ((54-217))
---------------------------------PRRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPELD
General information:
TITO was launched using:
RESULT:
Template:
1H2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91081 for 967 contacts (-94.2/contact) +
2D Compatibility (PS) -13681 + (NN) -8228 + (LL) 2056
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -117234.0 ( -121.23 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_1H2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H2A-query.scw
PDB file :
Tito_Scwrl_1H2A.pdb
: