Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKINFDAATKGNPGISTCAIVIKEDKQHYTYTHELGEMDNHTAEWAACIYALEHARELNVQNALLYTDSKLIADSIEA-------GYVKNANFKPYFDQIEIFEKDFDLLFVKWIPRE----QNKEANQHAQQALYKLIKKNK
3QIO Chain:A ((13-148))
-ETFYVDGAANRETKLGKAGYVTNRGRQK---VVTLTDTTNQKTELQAIYLALQDSG----LEVNIVTDSQYALGIITQWIHNWKK-------NVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKV-----
General information:
TITO was launched using:
RESULT:
Template:
3QIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55968 for 898 contacts (-62.3/contact) +
2D Compatibility (PS) -12360 + (NN) -2549 + (LL) 1312
1D Compatibility (HY) -5600 + (ID) 1000
Total energy: -76165.0 ( -84.82 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3QIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QIO-query.scw
PDB file :
Tito_Scwrl_3QIO.pdb
: