Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKNIL-KSGIALSELGLGC--MSLGTDLKKAEQIIDCAVENGITYFDTADMYDK-------GINESVVGKALLKYQQRDDIFIGTKVGNRLTKD---GSTTWDPSKSYIKEAVKGSLKRLGIDHIDLYQLHGGTIDD-----------------PLDETISAFDELKQEGIIRAYGISSIRPNVIDYYLK------HSQIETIMSQFNLIDNRPES-LLDAIHNNDVKVLARGPVSKGLLT-SNS-VNVLDNKFKDG-IFDYS----HD--ELGETIASIKE-IESNLSALTFSYLTSHDVLGSIIVGASSVDQLKENIENYHTKVGLDQIKTARARVKDLEYTNHLV |
| 1LQA Chain:A ((1-344)) | MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAG-ARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVYTYP---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135914 for 2494 contacts (-54.5/contact) +
2D Compatibility (PS) -31626 + (NN) -9559 + (LL) 396
1D Compatibility (HY) -16400 + (ID) 4000
Total energy: -197103.0 ( -79.03 by residue)
QMean score : 0.515
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