Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYDYDEPLYLISVVAKILGVHPQTSRQYEKEGLIEPS-RTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRL--------KEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELILFKK
3GP4 Chain:A ((2-104))
-------SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRR-AGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEEL
General information:
TITO was launched using:
RESULT:
Template:
3GP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38544 for 591 contacts (-65.2/contact) +
2D Compatibility (PS) -10175 + (NN) -5175 + (LL) 128
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -57666.0 ( -97.57 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3GP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP4-query.scw
PDB file :
Tito_Scwrl_3GP4.pdb
: