Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYENDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFEG-VFFAIGAHPYDVESF---DEGLFEKFVS-----HQKCVAIGECGLDYYRLPELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNLLKSYPKAFGVLHCFNAD-SMLLELSDR-FYYGIGGVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFRGTRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
2Y1H Chain:A ((5-265))
GLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQ----RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAG--TGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRS--GQKQKLVKQLPLTSICLETDSPALGPEK--QVRNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLFPKL
General information:
TITO was launched using:
RESULT:
Template:
2Y1H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155511 for 2128 contacts (-73.1/contact) +
2D Compatibility (PS) -25730 + (NN) -15622 + (LL) 772
1D Compatibility (HY) -12800 + (ID) 3450
Total energy: -212341.0 ( -99.78 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2Y1H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y1H-query.scw
PDB file :
Tito_Scwrl_2Y1H.pdb
: