Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSISTGRMYRSAREVGFQVSS---SGHVIASNGSYAAIR--DEQLLKTTLEEKAIRSTYDIMSDFDLPLFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGIFDENMHQFLNAIVVAE--EDASKLTEVRAALNEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVAMANASDNVKAAANHLTDTNEADGVYKFLKEFIS |
| 1RKQ Chain:A ((3-270)) | -LAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANRDISYYTVHESFVA--TIP--LVF---CEAEKM-DPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTV--LKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEKYV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90678 for 2333 contacts (-38.9/contact) +
2D Compatibility (PS) -27735 + (NN) -11371 + (LL) 724
1D Compatibility (HY) -16400 + (ID) 3450
Total energy: -148910.0 ( -63.83 by residue)
QMean score : 0.422
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