Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKSERLNDMMLFLNDKNVFQLSDIMTKYDISRSTAIRDVKSLEEIGMPIYSERGRNGHYQVLRNRLLSPIVFNIDEVFALYFSMLTLKAYETTPFHLSVEKLK--TKFERCLSAEKIEMLRKTEEVFSL-GYIKHNNQCEFLDVILQFTMEEKVCQINYDK----------KGIEKTYV---VQFYNISSAYGQWYVTSYNFETKRMQVFRCDR-ILELEENHAFEAKKLTDLK-----SETDYLYKKKDAINFEVEIASNGVDLFFKENYPS------MKLNQEQGRNVIRGFYNRGEEPFIINYLLGFGDKINMVQPDSLKEMLLNELKSLQNHLQKLS |
| 4AV9 Chain:A ((14-338)) | ---SNPIVDYEFNQDQSCLIVSTP--KSFDIYNVHPLKRIMSQEMPD---------AGTIRMLHRTNYIAFVSTKKELLHIWDD-VKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNKITEDIKFGGVCEFANGLLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRLNRK-GDMVATCSQDGT-LIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWTLHVFEVFNDAENKRHVLKDWINSEWSICNFKLKVSKGSNDCKIAWISDTGLVIVWPNRRLADTFKLNYNDDEHVWWLQLNQRNEIP----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AV9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47115 for 2207 contacts (-21.3/contact) +
2D Compatibility (PS) -29618 + (NN) 12952 + (LL) 2088
1D Compatibility (HY) -14000 + (ID) 2500
Total energy: -78193.0 ( -35.43 by residue)
QMean score : 0.077
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