Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDASKIPYRLNNKGGLIVTLPGKDETKHRMLTAHVDTLGAMVKEIKADGRLLLTLIGGYRFNAIEGEYCTIETSAGDLYSGTILMHQTSVHVYKDAG-TAERNDKNMEVRLDVKALDADKVRALGIEVGDFVSFDPRVQIINDEYIKSRHLDDKASVAILLQLINHIHENNLELPHTTHFLISNNEEIGYGGNSNIPA--ETVEYLAVDMGALGDGQ----TSDEYTVSICAKDGSGPYHLGLRKHLVELAKKNNIDYKVDIYP-FYASDASAAINAGNDIIHGLIGPGIDASHA-YERTHRDSLYHTEKLVYAYLFSNILK |
| 1VHO Chain:A ((5-335)) | -------METGKLLMELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTTRHGSLIGYKKGKG-IGKLAFFAHVDEIGFVVSKVE-GQFARLEPV--------YASKVRIYTKNG-IERGVIGM--LAPHLQDSESRKKVPTYDEIF--VDLSL------CERGVRVGDIAVIDQTAFETN-GKVVGKALDNRASCGVLVKVLEFLKRY--DHPWDVYVVFSVQEETGCLGALTGAYEINPDAAIVMDVTFASEPPFSDHIELGKGPVIGLGP---VVDRNLVQKIIEIAKKHNVSLQEEAVGGR----TDFVQLVRNGVRTSLISIPLKYMHTPVEMVDPRDVEELARLLSLVAVELE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124020 for 2666 contacts (-46.5/contact) +
2D Compatibility (PS) -32645 + (NN) -8562 + (LL) 1496
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -176581.0 ( -66.23 by residue)
QMean score : 0.355
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