Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNG---EREADFINVVMWGRLAETLASYGTKGSLISVDGELRTRKYEKD-GQTHYITEVLASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF
3AFP Chain:A ((3-113))
GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTP-------EWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFE-REGEKRTVVEVEVDEIGPSLRYATAKVNKA------------------
General information:
TITO was launched using:
RESULT:
Template:
3AFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42779 for 629 contacts (-68.0/contact) +
2D Compatibility (PS) -10876 + (NN) -3760 + (LL) 1068
1D Compatibility (HY) -2800 + (ID) 1400
Total energy: -60547.0 ( -96.26 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3AFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AFP-query.scw
PDB file :
Tito_Scwrl_3AFP.pdb
: