Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDKKIVYYFDHDLSKKDMGGVGPTYTGKNLLFLLWWTYSYVAEDNLDIDTSLFEVPEFNDFYNNGLELYRIKNELANYNIRFGYEVNPKDSTKMLIGILPTDEEDYVKGYRNFIADISNPDTRYAIYHRLIKTMDTMLPIEQINVYKSLAKGNKK
4P1Z Chain:A ((2-128))
----------------------APLISVKPLDNWLLIYTRRNYEAANSLIQNLFKVTPAMGIQMKKAIMIEVDDRTEAYLRALQQKVTS--DTQIVVCLLSSNRKDKYDAIKKYLCTDC-PTPSQCVVARTLGKQQTVMAIATKIALQMNCK----
General information:
TITO was launched using:
RESULT:
Template:
4P1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52840 for 902 contacts (-58.6/contact) +
2D Compatibility (PS) -13467 + (NN) -3004 + (LL) 956
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -74455.0 ( -82.54 by residue)
QMean score : 0.156
(partial model without unconserved sides chains):
PDB file :
Tito_4P1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P1Z-query.scw
PDB file :
Tito_Scwrl_4P1Z.pdb
: