Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKTKFSDPLEQLAKKRKRKTLFKTVVLALITVLLVVGIAFKGFTYLTSKNGQKT----YHN-FELLSEIAYPNISYDSLYYQPSGQFTGKVHADRFKDIDGVQIPYSSFEENYSISGTFGTNADEKSE-KNGLY---DRGTRQKVPQFFNKNVKYKKGEAKTTPTNDLKYVNKLNNDLIEIAITFDKSYSYKEIKTMIPNNIKQNWLWIGTSTELDTSYWPTKYQFGTDPETL-NTPQIFIDKIKENLKGNSKV-YFNNINIYSDLEKYAKKYDKVNNS-DKLKFSGIILTGKAENF-KQLKEK--EWV-HASSIGANIEYKPYYKLDKE-- |
| 3KDR Chain:A ((7-297)) | AVTT-RAEALTIPAVLRARNLLSTTVA----RTPLVCDGTLPPFVPVAAPPGAATMQTPFHRMLATADDLLFNGVACWALDRDESGTCIGAIH-----------IPLDTWQIE---ENTVRVNGKAVDPMEVCIFVGIHGGLLTHASETFTDARNLVRAAARVAQNP---------AALIELRQTNNAQLSPDDVDRIINGYVAARR---GRNSGVGFSSSG-----LEVHEHEMAKENLLIEGRNAAAVDVARAMNVPAAFIDATVGQNAA------SRMIELVTFGV------EPLMSAIEARLNQPDMHADHLANPLKFDPAALLDAIPT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KDR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 46749 for 1751 contacts (26.7/contact) +
2D Compatibility (PS) -27485 + (NN) -4641 + (LL) 3836
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: 10159.0 ( 5.80 by residue)
QMean score : 0.180
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