Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | M----QKFKERFDTLSDAILAIAMTILVLEIKTPATMGDIGDFTRNIGLFIVSFVVVFNFWYERAQNSLDAQKTNDEIIALDIIEHLGICLIPLFTKFMISFENHNFAVMAYGLLTLLVGLTSDIIRIRLASYDLVTIPSELKERVIKVMTTFAIRSVVVRFIIIILAYFLPEVGIFAYLVIPLFMFWRRSRAGKYYAKKGIEAPSYIKLFIQIGERAPEDFTNSSSGIGGVKRLYKK |
1HGV Chain:A ((1-46)) | MDFNPSEVASQVTNYIQAIAAAGVGVLALAIGLSAAWKYAKRFLKG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -443 for 174 contacts (-2.5/contact) +
2D Compatibility (PS) -4496 + (NN) -1567 + (LL) 17420
1D Compatibility (HY) -3200 + (ID) 450
Total energy: 7264.0 ( 41.75 by residue)
QMean score : 0.138
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