Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFQFFLLVEAVVLVMGLMKILSDDWTSFIFILALILLALRFYNNDS-RHNFLLTTSLLLLFLIFMLNPYIIAAVVFAVLYVLINHFSQVKKKNRYALIQFKNHQLDVKTTRNQWLGTDQHESDFYDFEDINIIRIS-GTDTIDLTNVIVSGQDNVIIIQKVFGDTKVLVPLDVAVKADISSVYGSVQYFDFEEYD---LRNESIKLSQEEEYYLLKRVKLVVNTIAGKVEVSRK
4QRK Chain:A ((9-220))
-KPKEEIKIVEP----------NGAEKTKLNLNFGVGKLNISGNEEKLMKGKFIYSENEWKPEIKYEVKDK-DGELEISQPGLKSGNVSLNNKRNEWNINLNEK----IPTEIKLSLGTGEFKADLSKI-NLKELNVGMGVGKVDLDISGNYKNNVKVNIEGGVGEATVYLPKSIGVKIKAEKGVGAVNANGFIVEGENIYKNSQYGKSKN-------SIEVNIEAGVGAINIKQK
General information:
TITO was launched using:
RESULT:
Template:
4QRK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126919 for 1681 contacts (-75.5/contact) +
2D Compatibility (PS) -22297 + (NN) 3959 + (LL) 3028
1D Compatibility (HY) -1200 + (ID) 1500
Total energy: -144929.0 ( -86.22 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_4QRK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QRK-query.scw
PDB file :
Tito_Scwrl_4QRK.pdb
: