Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFENIIYGIDGNVATIMLNRPDISNGFNIPMCQEIIDAIRLVSENKDVMFLVIEAQGPIFSIGGDLKVMKAAVESDDISSLTKIAELVNQISYDLLQLEKPVVMCVDGAVAGAAANIALAADFVIASKKSKFIQAFVGVGLAPDAGGLLLLSKSIGITRAVQLALTGESLSAEKAEALGIVYKLCESDKIGKIKDQLLKRLSRHSINSYQAIKSLAWEAAFKDWEQ--Y-KKLE-LQLQESLAFKQDFKEGVRAHADRRRPNFLGK
3P5M Chain:A ((4-255))
-SMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDL---DTA--G--------AADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAA----ATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFRGH
General information:
TITO was launched using:
RESULT:
Template:
3P5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161777 for 2083 contacts (-77.7/contact) +
2D Compatibility (PS) -27299 + (NN) -13490 + (LL) 1740
1D Compatibility (HY) -4400 + (ID) 3900
Total energy: -209126.0 ( -100.40 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3P5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P5M-query.scw
PDB file :
Tito_Scwrl_3P5M.pdb
: