Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTK----YVNCQTTEALI-RTGVNHIGENRVDKFLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKRAQKPVKCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFFK
2DY3 Chain:A ((5-221))
-TTKIDLDAIAHNTRVLKQMAG----PAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGIS--Q-EVLCWIWTPEQDFRAAIDR-NIDLAVISPAHAKALIETDAEHIRVSIKIDSGL--HRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLA------ETDRQIIAFRRALALARK-HG--LECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYG
General information:
TITO was launched using:
RESULT:
Template:
2DY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128264 for 1662 contacts (-77.2/contact) +
2D Compatibility (PS) -21943 + (NN) -6248 + (LL) 1748
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -159257.0 ( -95.82 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_2DY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DY3-query.scw
PDB file :
Tito_Scwrl_2DY3.pdb
: