Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNQLKNNYFFAVIRGKSSEDALEIAKHAILGGIRNIEVTFSTPEASKVIKQLSDDFKNNKKIIVGAGTVMTTQLAKDAIDAGAKFLVSPHFDSDIANLANENKVYYFPGCATATEIVVARKYKCQIIKLFP----GGVVGPDFIKDIHGPIPDVDLMPSGGVSVSNVAEWRKAGAVAVGVGSALSSKVATEG--YDSVTKIAKQFVSALD
1EUA Chain:B ((27-208))
-------------------EHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAIA---KEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGV---KALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAK
General information:
TITO was launched using:
RESULT:
Template:
1EUA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108806 for 1363 contacts (-79.8/contact) +
2D Compatibility (PS) -19217 + (NN) -10547 + (LL) 1196
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -153274.0 ( -112.45 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_1EUA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EUA-query.scw
PDB file :
Tito_Scwrl_1EUA.pdb
: