Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDS--LQLDAL------QGDLPNGIQKQDIFKTLALIGD--KTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
2DXA Chain:A ((8-164))
--------MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQ--KKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIAR
General information:
TITO was launched using:
RESULT:
Template:
2DXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63528 for 1206 contacts (-52.7/contact) +
2D Compatibility (PS) -15776 + (NN) -2311 + (LL) 780
1D Compatibility (HY) -5600 + (ID) 2350
Total energy: -88785.0 ( -73.62 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_2DXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DXA-query.scw
PDB file :
Tito_Scwrl_2DXA.pdb
: