Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLSVLDYGLID-------YGK--TASDAIQETILLSQEAERLGYHQFWVAEHHGVK------AFSISNPELMIMHLANQTKSIKIGSGGIMPLHYSSFKLAETLKTLETCHPNRVSIGLGNSLGTVKVSNALRSLH----K-AHDYEEVLEELKSWLIDK----------------------SSSKE-------PL-VQPTLSSFPDLYVLGSGQKSAYLAAKLGLGFTFGVFPFMDKDPLTEAKKLSSLYYHQFEEYYPNKS-PNLMVAAFVVIADTSEEAENIAKTLDIW--------MLGNK-DFNEF-----------------ATFPTI-EEAN----HYQLTPEQKA-KIK-----SNRHRMIVGDPKQVKDSLDALVNASQAEELLLIPLVPGLDQRIKSLKLLSQLY |
| 3SDO Chain:A ((10-412)) | IHFGVLIQGAGANMNAWKHPSVPPDASVNFDFYVDRARRAENAGIAFAFIADSAYVTPKSAPHFLNRFEPISLLSALAVLTSKIGLV-GTMSSSYSEPYNVARQFASLDLISGGRAGWNVVTSSIEG-TGKNYGRPHPDHAQRYAIAAEHLDVVQGLWDSWDDDALVRDRATGRFFDPDKLHRLDHRGRFFSVEGPLNIRRSPQGQPVIFQAGSSDDGIDLAGRSADAVFSNGS---TFD---EARVFYRRVKAAAAAAGRNPDHVKVFPGIGPIVGATQQEADDKYRQVRDLLSPREALAYLSHFFQQHDFSVYPLDGPFPDIGTLGSDGFQSTTDNIKRLARERKLTLREVAYEVSTRRSNIGTSEAFIGTPEAVASEMIRWVDEGAADGFMLGLPVTG-----FGLDDFVDHV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112182 for 2508 contacts (-44.7/contact) +
2D Compatibility (PS) -34162 + (NN) -14624 + (LL) 848
1D Compatibility (HY) -4800 + (ID) 2600
Total energy: -167520.0 ( -66.79 by residue)
QMean score : 0.487
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