Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKRITLAVTGSISAYKA-ADLTSQLTKIGYDVHIIMTQAATEFITPL----TLQVLSKNPIHLDVMDEHNPKIINHIELAKRTDLFIVAPASANTIAHLAYGFADNIVTSVAL-AMPDETPKLIAPAMNTKMYHNTITQRNIDILKK-IGYQEIEPRISLLACGDTGQGALADISTILKCIQEVAN
3MCU Chain:A ((4-183))
KGKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSY--------AEWIKKIEEITGFKAINSIVG------AEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVSTNDALGLNGV---NLMRLMATKNIYFVPFGQDA--PEKKPNSMVARMELLEDTVLEALQ
General information:
TITO was launched using:
RESULT:
Template:
3MCU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125739 for 1287 contacts (-97.7/contact) +
2D Compatibility (PS) -17052 + (NN) -4644 + (LL) 1480
1D Compatibility (HY) -2800 + (ID) 1300
Total energy: -150055.0 ( -116.59 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_3MCU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MCU-query.scw
PDB file :
Tito_Scwrl_3MCU.pdb
: