Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFNLEQVKVFENYEIENWEEGQVTLTTKVVDSSLNYYGNAHGGYLFTLCDQVSGLVAISTGYEAVTLQSNINYLRAGRLDDLLTVIGTCVHNGRTTKVVDVHIKNQKGEMVTTAIFTMFVTGERKEK
3LBB Chain:B ((39-161))
---HLHEIRVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLVSISTGFDAVTLQSSINYLKSGKLGDTLLIDGRCVHDGRTTKVVDVTVTNQLKQEVAKATFTMFVTGKRK--
General information:
TITO was launched using:
RESULT:
Template:
3LBB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68153 for 921 contacts (-74.0/contact) +
2D Compatibility (PS) -13307 + (NN) -1370 + (LL) 572
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -101758.0 ( -110.49 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3LBB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LBB-query.scw
PDB file :
Tito_Scwrl_3LBB.pdb
: