Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKIKLIAVVGPTAVGKTALGIELAKTFNGEIISGDSQQVYQKLDIGTAKASKEEQEQAYHHLIDVREVNENYSVYDFVKEAKVAIDTIISKGKIPIIVGGTGLYLQSLFEGYHLGGEVNQET-LKAYREKLESLSDEDLFEKLTEQSIVIPQVN-------RRRAIRALELAKF----GNDLQNS---ESPYDVLLIGLNDDRQVLYDRINRRVDLMIDNGLLDEAKWLYD-NY--------PSVQASRGIGYKELFPYFSKQI-PLEEAVDKLKQNTRRFAKRQLTWFRNRM------NVEFIMVGEENY---QQ--KIKRKVSDFLSSK |
| 3EPH Chain:A ((2-328)) | ---KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV--DTKSSERKLTRKQLD-ILES-TDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLT---VKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISNR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EPH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -94818 for 2153 contacts (-44.0/contact) +
2D Compatibility (PS) -30613 + (NN) -12119 + (LL) 864
1D Compatibility (HY) -14800 + (ID) 4650
Total energy: -156136.0 ( -72.52 by residue)
QMean score : 0.508
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