Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEIYLGKNTKRNQRLLTFLDSYEIAYTCKESG--DINREVLQSLFSKTSDCFDLL-SPSFLRFKRQN------QMTLSELMNLVLRNPDQNIRLPLVIDKDKVYPDMGVEEARVFIPRRLKVTFFRDSLFCDKEQR
3GKX Chain:A ((3-117))
-TLFLQYPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKFFNTSGVVYKELKLSSKLPTMTEEEQIALLATNGK-LVKRPLVVTERFVLVGFKPEEWEKLK--------------------
General information:
TITO was launched using:
RESULT:
Template:
3GKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37657 for 709 contacts (-53.1/contact) +
2D Compatibility (PS) -11349 + (NN) -5584 + (LL) 1912
1D Compatibility (HY) 800 + (ID) 650
Total energy: -52528.0 ( -74.09 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_3GKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKX-query.scw
PDB file :
Tito_Scwrl_3GKX.pdb
: