Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSYEKLLERFLTYVKINTRSNPNSTQTPTTQSQVDFALTVLKPEMEAIGLKDVHY-LP-SNGYLVGTLPATSDRLCHKIGFISHMDTAD-FNAENITPQIVDYKGGDIELGDSGYILSPKDFPNLNNYHGQTLITTDGKTLLGADDKSGIAEIMTAM----EYLASHPE-IEHCEIRVGFGPDEEIGI--GADKFDVKDFDVDFAYTVDGGPLGELQYETFSAAGLELTFEGRNVHPGTAKNQMINALQLAMDFHSQLPENERPEQTDGYQGFYHLYDLSGT------VDQAKSSYIIRDFEEVNFLKRKHLAQDIADNMNEALQSERVKVKLYDQYYNMKKVIEKDMTPINIAKEVMEELDIKPIIEPIRGGTDGSKISFMGIPTPNLFAGGE-NMHGRFEFVSLQTMEKAVDVILGIVAKD |
2RB7 Chain:A ((4-357)) | -SMQHIVELTSDLIRFPSMHSRP-------EQISRCAGF-IMDWCAQNGIH-AERMDHDGIPSVMVL-PEK---GRAGLLLMAHIDVVDAED----DLFVPRV--------------------------ENDRLYGRGA----NDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALP-LIRADYVVALDGGNPQQVITKEKGIIDIKLTCTGKAAHG-ARPWMGVNAVDLLMEDYTRLKTLFAEENEDHWHRTVNLGRIRAGESTNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG--------TVSIVR--T-VPV--FLAADSPYTERLLALSGA-----TAGKAHGASDARYLGENGLTGVVWGAEGFNTLHSRDECLHIPSLQSIYDPLMQLAREM |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RB7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66900 for 2865 contacts (-23.4/contact) +
2D Compatibility (PS) -36121 + (NN) -13513 + (LL) 2400
1D Compatibility (HY) -6000 + (ID) 2700
Total energy: -122834.0 ( -42.87 by residue)
QMean score : 0.409
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