Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVLGSFSTISALDDGQKSSRKAAYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLPKQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
| 3GD8 Chain:A ((2-221)) | ----AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKP-LPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--------GVTMVHGN-L-------TAGHGLLVELIITFQLVFTIFASCDSKRTD--------------------------VTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG--------------NWENHWIYWVGPIIGAVLAGGLYEYVFC |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GD8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161770 for 1948 contacts (-83.0/contact) +
2D Compatibility (PS) -22882 + (NN) -5860 + (LL) 3456
1D Compatibility (HY) -16400 + (ID) 2950
Total energy: -206406.0 ( -105.96 by residue)
QMean score : 0.298
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