Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPNVKDITRESWILSTFPEWGTWLNEEIEEEVVADGNFAMWWL------GNCGVWIKTPGGANVVMDLWSNRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVIDPFAINELDYYLVSHFHSDHIDINTAAAIINNPNLDHVKFVGPYECGEIWKKWG---------------VP-------EERIIVIKPGESFEF-KDIKVTAVESFDRTCLVTLPVDGAEEHDGELAGLAVTDEEMARKAVNYIFET--PGGTIYHGADSHFSNYF--AKHG-KDYKIDVAINNYGDNPVGIQDKMTSIDLLRMAENLRAKVIIPVHYDIWSNFMASTDEILQLWKMRKERLQYDFHPFIWEVGGKYTYPQDKDRIEYHHPRGFDDCFEQESNIQFKALL |
| 2YCB Chain:A ((178-380)) | -----------------------------------DWARLTAMGGFREVGRSCLYLQTP-NSRVLLDCGVNVAGG-----------------DDKNSYPY--LNVP---EFTLDSLDAVIITHAHLDHS--GFLPYLYHYG--YDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHI-----------------------------LGSAMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDGMIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99021 for 1316 contacts (-75.2/contact) +
2D Compatibility (PS) -19326 + (NN) -11073 + (LL) 6800
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -126520.0 ( -96.14 by residue)
QMean score : 0.501
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