Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MVKKRYSKNSHNLITLLGIVVLASLISDFWSEV-IATLLIIG-----GGYCAYYVYD------------KKRLKRFTSNQRI-------------EALKSDIKETDQDIRHLEILKKDNR-----------SKEYIKLAHQILPQLDLIRNEANQL----QKAIEPNIYKRITK-KANTFSNEINEQLIKLHA----SPELEPISDQEDEMIRIAPELKPFYHNIQDDHFAIL--KKIEEADNKAELAAIHQANMKR-------FTDVLAGYIRI--------------------KQSPKNFNNAKERLEQALQAIKKFNLDLDETLRQLNES---------DMKDFDVSLRMMQDERNSK |
| 1A6Q Chain:A ((2-368)) | GAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELDKYLECRVEEIIKGVPDLVHVMRTLASENIPSLPPGGELASKRNVIEAVYNRLNPY |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A6Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49433 for 1828 contacts (-27.0/contact) +
2D Compatibility (PS) -29087 + (NN) -8631 + (LL) 0
1D Compatibility (HY) -6800 + (ID) 2500
Total energy: -96451.0 ( -52.76 by residue)
QMean score : 0.233
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