Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTVHSSIDQHPDLLALRASFDRAAESTIAHFTFGLALLAGLYVAASPWIVGFSATRGLPTCDLIVGIAVAYLAYGFASALDRTHGMTWTLPVLGVWVIFSPWVLPGVAVTAGMMWSHIIAGAVVAVLGFYFGMRTRAAANQG
4OD8 Chain:C ((3-52))
-MASSADLTNLKELLSLYKSLRFSDSAAIEKYNSLVEWGTSTYWKIGVQKV--------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4OD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25082 for 263 contacts (-95.4/contact) +
2D Compatibility (PS) -5121 + (NN) -362 + (LL) 7216
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -26099.0 ( -99.24 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_4OD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OD8-query.scw
PDB file :
Tito_Scwrl_4OD8.pdb
: