Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNEVWLITAGAAIFAAFPGWYATVFSA---------LYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADFGIAAGSWLPALLW----GVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKD------WTWLVLA-------VAGCAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP |
| 3PQV Chain:A ((6-357)) | SRYVTFEGSRNFRLRVVMATLSGKAIKIEKIRSDDLNPGL---KDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQCPNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHN---DAGIDAIKWGLMPIMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHALDKTMISSIRGVSYST----RVSPSLVNRMIDGAKKVLKSASCEVNITADVWRGENSGKSPGWGLTLVAENKQGWRIFSEAIGDAGDVPEDIGASVAYHLLEEISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLRDIKKVF-GTEILLKPVDDNTTDLIATIKGIGF--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PQV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -387865 for 2662 contacts (-145.7/contact) +
2D Compatibility (PS) -33265 + (NN) 4009 + (LL) 592
1D Compatibility (HY) -400 + (ID) 1950
Total energy: -418879.0 ( -157.35 by residue)
QMean score : 0.138
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