Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDHLTACAAVHPG-----------PLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWAS--------IATVPAAAVGLVILVRSRGLGWAELGLSR-QHWKSGLVYALAAVALVVAVISVGVLLP-ITRPMFMNHH---------------------YATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGF---RGVAVAGSVLF---------GLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLI-APIAL---HWSLNGMGALAAALVWHLST------------------ |
| 5AFR Chain:A ((8-410)) | LANELIEFVAATVTGIKNSPKENEQAFIDYLHCQYLERFQFFLGLFVFLFIVTIDIAIYDANLANSTLLIIKQISAIYNAGNLASIITHGVSSVFGQLIKSDIDKTRRKLDDISKQFQQLHTSIETPDLLAMVPSIIKLAVSKGATSHDYANYLPSNDLESMRFLNILQSIANKWFLVLKQTLFLDEVEFWSNFYEVLKSLIEQTQSQEFQVCLSVLTNAKRFHNLTNLLNEGSLSDKFKLADKYNQFLSSIPIDEDLQELFPVLASSLKKFRYSGYPVQRFVVLMDKISQEVMDAILSNLSYGSFLGLYEKSAGMIEEWDDIVQDVNLLIR |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109341 for 1330 contacts (-82.2/contact) +
2D Compatibility (PS) -25982 + (NN) -3759 + (LL) 0
1D Compatibility (HY) 7200 + (ID) 1300
Total energy: -133182.0 ( -100.14 by residue)
QMean score : -0.010
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