Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4LYF Chain:B ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHFV---------SYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4LYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111767 for 1279 contacts (-87.4/contact) +
2D Compatibility (PS) -17412 + (NN) -6650 + (LL) 2060
1D Compatibility (HY) -20400 + (ID) 7450
Total energy: -161619.0 ( -126.36 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_4LYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYF-query.scw
PDB file :
Tito_Scwrl_4LYF.pdb
: