Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4LYF Chain:C ((3-168))
-TEYKLVVVGACGVGKSALTIQLIQNHFV---------SYRKQVVIDGETSLLDILDTAGQEEY---RDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4LYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105773 for 1270 contacts (-83.3/contact) +
2D Compatibility (PS) -17215 + (NN) -8742 + (LL) 1548
1D Compatibility (HY) -19200 + (ID) 6850
Total energy: -156232.0 ( -123.02 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_4LYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYF-query.scw
PDB file :
Tito_Scwrl_4LYF.pdb
: