Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
4M6J Chain:A ((4-186))
--SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN----
General information:
TITO was launched using:
RESULT:
Template:
4M6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112738 for 1353 contacts (-83.3/contact) +
2D Compatibility (PS) -20083 + (NN) -10970 + (LL) 924
1D Compatibility (HY) -23600 + (ID) 6900
Total energy: -173367.0 ( -128.14 by residue)
QMean score : 0.751
(partial model without unconserved sides chains):
PDB file :
Tito_4M6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M6J-query.scw
PDB file :
Tito_Scwrl_4M6J.pdb
: