Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT
3CM2 Chain:B ((27-129))
-------------STNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRT-
General information:
TITO was launched using:
RESULT:
Template:
3CM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27413 for 698 contacts (-39.3/contact) +
2D Compatibility (PS) -11297 + (NN) -6855 + (LL) 292
1D Compatibility (HY) -14000 + (ID) 5150
Total energy: -64423.0 ( -92.30 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3CM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CM2-query.scw
PDB file :
Tito_Scwrl_3CM2.pdb
: