Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
4F2W Chain:B ((17-246))
MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKLA--
General information:
TITO was launched using:
RESULT:
Template:
4F2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176846 for 2068 contacts (-85.5/contact) +
2D Compatibility (PS) -25101 + (NN) -16930 + (LL) -128
1D Compatibility (HY) -33200 + (ID) 11000
Total energy: -263205.0 ( -127.28 by residue)
QMean score : 0.778
(partial model without unconserved sides chains):
PDB file :
Tito_4F2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F2W-query.scw
PDB file :
Tito_Scwrl_4F2W.pdb
: