Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIERITKAAHLIDMNDIIREGNPTLRTVAEEV--TFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
1Y6H Chain:A ((3-165))
----------------RKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRH------------AEGVGLAAPQIGILKQIVVVGSEDNERYPGTPD---VPERIILNPVITPLTKDTS--GFWEGCLSVP-GMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGF--------
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49179 for 1241 contacts (-39.6/contact) +
2D Compatibility (PS) -17339 + (NN) -5019 + (LL) 4108
1D Compatibility (HY) -12000 + (ID) 2850
Total energy: -82279.0 ( -66.30 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: