Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4MT9 Chain:B ((9-211))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGR--------AEYVIYRGEQAYPEYLITYQIMKPE---
General information:
TITO was launched using:
RESULT:
Template:
4MT9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60922 for 1524 contacts (-40.0/contact) +
2D Compatibility (PS) -21439 + (NN) -9848 + (LL) 160
1D Compatibility (HY) -25600 + (ID) 9750
Total energy: -127399.0 ( -83.60 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_4MT9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MT9-query.scw
PDB file :
Tito_Scwrl_4MT9.pdb
: